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baselinenowcast 0.0.0.1000

  • Standardises naming of objects that are matrices vs vectors and objects that contain observations, point estimates, and probabilistic draws.
  • Modifies functions that estimate a delay and generate a point nowcast to ensure that they throw an error/warning if the first element of the delay PMF is 0.
  • Adjusts function to estimate delay distribution to be able to handle complete and partially complete reporting triangles.
  • Add function to convert a list of expected observed reporting squares to a long tidy dataframe indexed by reference time, delay, and a sample index.
  • Implement zero-handling in the bottom left of the reporting triangle when applying the delay to generate a point nowcast.
  • Add function to generate a list of expected observed reporting squares.
  • Add function to generate an expected observed reporting square from a point nowcast and a vector of dispersion parameters.
  • Add function to estimate dispersion parameters from a match list of nowcasts and observed reporting triangles.
  • Add functions to generate retrospective nowcasts from a single reporting triangle.
  • Refactor uncertainty estimation to use a user-facing function to generate retrospective reporting triangles.
  • Methods write-up as a separate vignette.
  • Introduced function to estimate the uncertainty from a triangle to be nowcasted and a delay distribution.
  • Introduced functions to get the delay estimate and apply the delay, and used these in the Getting Started vignette.
  • Added package skeleton.